Putative Regulons

The following data below was compiled from manually curated articles. Each regulon was built by finding regulators which appear in the same experiments as the genes and sites they regulate.

Click on the number under "Number of Regulons" to view a list of Regulators and additional detail.

TaxonNumber of Regulons
Acinetobacter baumannii ACICU 4
Acinetobacter baumannii ATCC 17978 4
Acinetobacter baumannii AYE 4
Acinetobacter baumannii SDF 1
Acinetobacter sp. ADP1 10
Aeromonas hydrophila subsp. hydrophila ATCC 7966 2
Agrobacterium tumefaciens 13
Agrobacterium tumefaciens str. C58 23
Archaeoglobus fulgidus DSM 4304 2
Azorhizobium caulinodans ORS 571 7
Azotobacter vinelandii DJ 12
Bacillus anthracis 2
Bacillus anthracis Tsiankovskii-I 4
Bacillus anthracis str. 'Ames Ancestor' 4
Bacillus anthracis str. A0174 4
Bacillus anthracis str. A0193 4
Bacillus anthracis str. A0389 4
Bacillus anthracis str. A0442 4
Bacillus anthracis str. A0465 4
Bacillus anthracis str. A0488 4
Bacillus anthracis str. A2012 4
Bacillus anthracis str. Ames 2
Bacillus anthracis str. Sterne 2
Bacillus cereus 03BB108 2
Bacillus cereus AH1134 2
Bacillus cereus AH187 2
Bacillus cereus AH820 2
Bacillus cereus ATCC 10987 2
Bacillus cereus ATCC 14579 2
Bacillus cereus B4264 1
Bacillus cereus E33L 2
Bacillus cereus G9241 2
Bacillus cereus G9842 1
Bacillus cereus H3081.97 2
Bacillus cereus NVH0597-99 2
Bacillus cereus W 2
Bacillus licheniformis ATCC 14580 4
Bacillus subtilis subsp. subtilis str. 168 35
Bacillus thuringiensis serovar israelensis ATCC 35646 3
Bacillus thuringiensis serovar konkukian str. 97-27 2
Bacillus thuringiensis str. Al Hakam 2
Bacteroides fragilis NCTC 9343 3
Bacteroides fragilis YCH46 4
Bacteroides thetaiotaomicron VPI-5482 3
Bartonella quintana str. Toulouse 3
Bdellovibrio bacteriovorus HD100 1
Bordetella avium 197N 2
Bordetella bronchiseptica RB50 6
Bordetella pertussis Tohama I 9
Bradyrhizobium japonicum USDA 110 20
Bradyrhizobium sp. ORS278 1
Brucella abortus S19 4
Brucella abortus bv. 1 str. 9-941 5
Brucella melitensis biovar Abortus 2308 5
Brucella melitensis bv. 1 str. 16M 7
Burkholderia cenocepacia AU 1054 3
Burkholderia cenocepacia HI2424 3
Burkholderia cenocepacia MC0-3 4
Burkholderia cenocepacia PC184 2
Burkholderia glumae 1
Burkholderia mallei 2002721280 1
Burkholderia mallei ATCC 10399 1
Burkholderia mallei ATCC 23344 1
Burkholderia mallei FMH 1
Burkholderia mallei GB8 horse 4 1
Burkholderia mallei JHU 1
Burkholderia mallei NCTC 10229 1
Burkholderia mallei NCTC 10247 1
Burkholderia mallei PRL-20 1
Burkholderia mallei SAVP1 1
Burkholderia pseudomallei 1106a 5
Burkholderia pseudomallei 1106b 5
Burkholderia pseudomallei 112 5
Burkholderia pseudomallei 14 5
Burkholderia pseudomallei 1655 5
Burkholderia pseudomallei 1710a 5
Burkholderia pseudomallei 1710b 5
Burkholderia pseudomallei 305 5
Burkholderia pseudomallei 406e 5
Burkholderia pseudomallei 668 5
Burkholderia pseudomallei 7894 4
Burkholderia pseudomallei 9 5
Burkholderia pseudomallei 91 5
Burkholderia pseudomallei B7210 5
Burkholderia pseudomallei BCC215 5
Burkholderia pseudomallei DM98 4
Burkholderia pseudomallei K96243 5
Burkholderia pseudomallei NCTC 13177 4
Burkholderia pseudomallei Pasteur 52237 4
Burkholderia pseudomallei S13 5
Burkholderia xenovorans LB400 1
Caulobacter crescentus CB15 17
Clostridium acetobutylicum ATCC 824 7
Clostridium beijerinckii NCIMB 8052 1
Clostridium botulinum A str. ATCC 19397 1
Clostridium botulinum A str. ATCC 3502 1
Clostridium botulinum A str. Hall 1
Clostridium botulinum B1 str. Okra 1
Clostridium botulinum Bf 1
Clostridium botulinum NCTC 2916 1
Clostridium butyricum 5521 1
Clostridium difficile 630 6
Clostridium difficile ATCC 43255 6
Clostridium difficile CIP 107932 6
Clostridium difficile QCD-23m63 5
Clostridium difficile QCD-32g58 4
Clostridium difficile QCD-37x79 6
Clostridium difficile QCD-63q42 6
Clostridium difficile QCD-76w55 6
Clostridium difficile QCD-97b34 6
Clostridium perfringens 1
Clostridium perfringens ATCC 13124 10
Clostridium perfringens B str. ATCC 3626 9
Clostridium perfringens C str. JGS1495 10
Clostridium perfringens CPE str. F4969 10
Clostridium perfringens D str. JGS1721 11
Clostridium perfringens E str. JGS1987 10
Clostridium perfringens NCTC 8239 10
Clostridium perfringens SM101 7
Clostridium perfringens str. 13 10
Clostridium tetani E88 1
Clostridium thermocellum ATCC 27405 2
Clostridium thermocellum JW20 1
Comamonas testosteroni KF-1 1
Corynebacterium ammoniagenes DSM 20306 4
Corynebacterium diphtheriae NCTC 13129 6
Corynebacterium glutamicum ATCC 13032 100
Corynebacterium glutamicum R 44
Corynebacterium jeikeium K411 1
Coxiella burnetii 2
Coxiella burnetii 'MSU Goat Q177' 1
Coxiella burnetii Dugway 5J108-111 1
Coxiella burnetii RSA 331 1
Coxiella burnetii RSA 334 1
Coxiella burnetii RSA 493 1
Cupriavidus metallidurans CH34 10
Desulfovibrio alaskensis G20 1
Desulfovibrio vulgaris DP4 1
Desulfovibrio vulgaris str. Hildenborough 1
Dichelobacter nodosus VCS1703A 3
Enterococcus faecalis 2
Enterococcus faecalis V583 17
Enterococcus faecium 8
Escherichia coli 101-1 58
Escherichia coli 536 56
Escherichia coli 53638 60
Escherichia coli APEC O1 52
Escherichia coli ATCC 8739 59
Escherichia coli B171 54
Escherichia coli B7A 55
Escherichia coli CFT073 55
Escherichia coli E110019 54
Escherichia coli E22 53
Escherichia coli E24377A 58
Escherichia coli F11 54
Escherichia coli HS 61
Escherichia coli O157:H7 str. EC4024 59
Escherichia coli O157:H7 str. EC4042 53
Escherichia coli O157:H7 str. EC4045 56
Escherichia coli O157:H7 str. EC4076 56
Escherichia coli O157:H7 str. EC4113 55
Escherichia coli O157:H7 str. EC4115 56
Escherichia coli O157:H7 str. EC4196 53
Escherichia coli O157:H7 str. EC4206 52
Escherichia coli O157:H7 str. EC4401 56
Escherichia coli O157:H7 str. EC4486 56
Escherichia coli O157:H7 str. EC4501 54
Escherichia coli O157:H7 str. EC508 53
Escherichia coli O157:H7 str. EC869 55
Escherichia coli O157:H7 str. EDL933 57
Escherichia coli O157:H7 str. Sakai 57
Escherichia coli SMS-3-5 51
Escherichia coli UTI89 57
Escherichia coli str. K-12 substr. DH10B 59
Escherichia coli str. K-12 substr. MG1655 63
Escherichia coli str. K-12 substr. W3110 63
Geobacter bemidjiensis Bem 1
Geobacter sulfurreducens PCA 4
Geobacter uraniireducens Rf4 1
Haemophilus ducreyi 35000HP 1
Haemophilus influenzae 22.1-21 2
Haemophilus influenzae 22.4-21 2
Haemophilus influenzae 3655 3
Haemophilus influenzae 86-028NP 2
Haemophilus influenzae PittAA 2
Haemophilus influenzae PittEE 2
Haemophilus influenzae PittGG 2
Haemophilus influenzae PittHH 2
Haemophilus influenzae PittII 2
Haemophilus influenzae R2846 2
Haemophilus influenzae R2866 3
Haemophilus influenzae R3021 2
Haemophilus influenzae Rd KW20 3
Halobacterium salinarum R1 8
Halobacterium sp. NRC-1 9
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 2
Lactobacillus acidophilus NCFM 1
Lactobacillus casei ATCC 334 4
Lactobacillus casei BL23 8
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1
Lactobacillus gasseri ATCC 33323 1
Lactobacillus plantarum WCFS1 8
Lactobacillus sakei subsp. sakei 23K 3
Lactococcus lactis 4
Lactococcus lactis subsp. cremoris MG1363 13
Lactococcus lactis subsp. cremoris SK11 14
Lactococcus lactis subsp. lactis 1
Lactococcus lactis subsp. lactis Il1403 14
Lactococcus lactis subsp. lactis bv. diacetylactis 1
Legionella pneumophila str. Corby 4
Legionella pneumophila str. Lens 4
Legionella pneumophila str. Paris 4
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3
Listeria innocua Clip11262 1
Listeria monocytogenes 10403S 20
Listeria monocytogenes EGD-e 23
Listeria monocytogenes F6900 19
Listeria monocytogenes FSL J1-175 6
Listeria monocytogenes FSL J1-208 2
Listeria monocytogenes FSL J2-003 8
Listeria monocytogenes FSL J2-064 11
Listeria monocytogenes FSL J2-071 4
Listeria monocytogenes FSL N1-017 11
Listeria monocytogenes FSL N3-165 21
Listeria monocytogenes HPB2262 11
Listeria monocytogenes J0161 20
Listeria monocytogenes J2818 19
Listeria monocytogenes LO28 8
Listeria monocytogenes serotype 1/2a str. F6854 20
Listeria monocytogenes serotype 4b str. F2365 12
Listeria monocytogenes serotype 4b str. H7858 12
Listonella anguillarum 2
Methanocaldococcus jannaschii DSM 2661 2
Methanococcus maripaludis S2 1
Methanosarcina acetivorans C2A 7
Methanosarcina mazei Go1 1
Methanothermobacter thermautotrophicus str. Delta H 4
Methylobacterium extorquens PA1 1
Mycobacterium smegmatis str. MC2 155 1
Mycobacterium tuberculosis C 1
Mycobacterium tuberculosis CDC1551 1
Mycobacterium tuberculosis F11 1
Mycobacterium tuberculosis H37Ra 2
Mycobacterium tuberculosis H37Rv 1
Myxococcus xanthus DK 1622 23
Neisseria gonorrhoeae FA 1090 15
Neisseria gonorrhoeae NCCP11945 15
Neisseria meningitidis 053442 6
Neisseria meningitidis FAM18 5
Neisseria meningitidis MC58 5
Neisseria meningitidis Z2491 6
Nitrosomonas europaea ATCC 19718 1
Nostoc punctiforme PCC 73102 1
Nostoc sp. PCC 7120 8
Oenococcus oeni ATCC BAA-1163 1
Oenococcus oeni PSU-1 1
Paracoccus denitrificans PD1222 12
Pectobacterium atrosepticum SCRI1043 1
Photobacterium profundum SS9 1
Photorhabdus luminescens subsp. laumondii TTO1 2
Polaromonas naphthalenivorans CJ2 1
Proteus mirabilis HI4320 4
Providencia stuartii ATCC 25827 2
Pseudomonas aeruginosa 2192 110
Pseudomonas aeruginosa C3719 101
Pseudomonas aeruginosa PA7 32
Pseudomonas aeruginosa PACS2 104
Pseudomonas aeruginosa PAO1 111
Pseudomonas aeruginosa UCBPP-PA14 106
Pseudomonas fluorescens Pf-5 7
Pseudomonas fluorescens Pf0-1 4
Pseudomonas putida 1
Pseudomonas putida F1 32
Pseudomonas putida GB-1 4
Pseudomonas putida KT2440 29
Pseudomonas putida W619 2
Pseudomonas resinovorans 1
Pseudomonas sp. ADP 1
Pseudomonas stutzeri A1501 6
Pseudomonas syringae pv. phaseolicola 1448A 4
Pseudomonas syringae pv. syringae B728a 8
Pseudomonas syringae pv. tomato str. DC3000 9
Pyrococcus furiosus DSM 3638 5
Ralstonia eutropha H16 5
Ralstonia eutropha JMP134 5
Ralstonia pickettii 12D 1
Ralstonia pickettii 12J 1
Ralstonia solanacearum GMI1000 12
Ralstonia solanacearum UW551 5
Rhizobium etli CFN 42 10
Rhizobium etli CIAT 652 2
Rhizobium leguminosarum bv. trifolii WSM1325 3
Rhizobium leguminosarum bv. trifolii WSM2304 1
Rhizobium leguminosarum bv. viciae 3841 14
Rhodobacter sphaeroides 2.4.1 24
Rhodobacter sphaeroides ATCC 17025 5
Rhodobacter sphaeroides ATCC 17029 24
Rhodopseudomonas palustris CGA009 6
Rhodopseudomonas palustris TIE-1 7
Rhodospirillum rubrum ATCC 11170 2
Rickettsia prowazekii str. Madrid E 1
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 4
Salmonella enterica subsp. enterica serovar Agona str. SL483 4
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 4
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3
Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 4
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 4
Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 4
Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 4
Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191 4
Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 4
Salmonella enterica subsp. enterica serovar Newport str. SL254 4
Salmonella enterica subsp. enterica serovar Newport str. SL317 4
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 4
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 4
Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 4
Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 4
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 4
Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 4
Salmonella enterica subsp. enterica serovar Typhi str. CT18 3
Salmonella enterica subsp. enterica serovar Typhi str. Ty2 4
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 4
Salmonella enterica subsp. enterica serovar Virchow str. SL491 4
Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 4
Shewanella frigidimarina NCIMB 400 1
Shewanella oneidensis MR-1 6
Shewanella sp. ANA-3 1
Sinorhizobium fredii NGR234 1
Sinorhizobium medicae WSM419 3
Sinorhizobium meliloti 1021 39
Sorangium cellulosum 'So ce 56' 1
Staphylococcus aureus 15
Staphylococcus aureus RF122 42
Staphylococcus aureus subsp. aureus COL 46
Staphylococcus aureus subsp. aureus JH1 48
Staphylococcus aureus subsp. aureus JH9 48
Staphylococcus aureus subsp. aureus MRSA252 41
Staphylococcus aureus subsp. aureus MSSA476 46
Staphylococcus aureus subsp. aureus MW2 44
Staphylococcus aureus subsp. aureus Mu3 46
Staphylococcus aureus subsp. aureus Mu50 47
Staphylococcus aureus subsp. aureus N315 47
Staphylococcus aureus subsp. aureus NCTC 8325 46
Staphylococcus aureus subsp. aureus USA300 47
Staphylococcus aureus subsp. aureus USA300_TCH1516 89
Staphylococcus aureus subsp. aureus USA300_TCH959 2
Staphylococcus aureus subsp. aureus str. Newman 45
Staphylococcus epidermidis ATCC 12228 4
Staphylococcus epidermidis RP62A 5
Stenotrophomonas maltophilia K279a 1
Streptococcus agalactiae 18RS21 4
Streptococcus agalactiae 2603V/R 4
Streptococcus agalactiae 515 5
Streptococcus agalactiae A909 5
Streptococcus agalactiae CJB111 5
Streptococcus agalactiae COH1 4
Streptococcus agalactiae H36B 5
Streptococcus agalactiae NEM316 6
Streptococcus gordonii str. Challis substr. CH1 9
Streptococcus mutans UA159 26
Streptococcus pneumoniae CDC0288-04 25
Streptococcus pneumoniae CDC1087-00 25
Streptococcus pneumoniae CDC1873-00 26
Streptococcus pneumoniae CDC3059-06 24
Streptococcus pneumoniae CGSP14 26
Streptococcus pneumoniae D39 25
Streptococcus pneumoniae G54 26
Streptococcus pneumoniae Hungary19A-6 27
Streptococcus pneumoniae MLV-016 24
Streptococcus pneumoniae R6 25
Streptococcus pneumoniae SP11-BS70 24
Streptococcus pneumoniae SP14-BS69 23
Streptococcus pneumoniae SP18-BS74 25
Streptococcus pneumoniae SP19-BS75 26
Streptococcus pneumoniae SP195 26
Streptococcus pneumoniae SP23-BS72 24
Streptococcus pneumoniae SP3-BS71 24
Streptococcus pneumoniae SP6-BS73 24
Streptococcus pneumoniae SP9-BS68 26
Streptococcus pneumoniae TIGR4 54
Streptococcus pyogenes 2
Streptococcus pyogenes M1 GAS 21
Streptococcus pyogenes M49 591 14
Streptococcus pyogenes MGAS10270 21
Streptococcus pyogenes MGAS10394 21
Streptococcus pyogenes MGAS10750 23
Streptococcus pyogenes MGAS2096 19
Streptococcus pyogenes MGAS315 21
Streptococcus pyogenes MGAS5005 22
Streptococcus pyogenes MGAS6180 21
Streptococcus pyogenes MGAS8232 24
Streptococcus pyogenes MGAS9429 22
Streptococcus pyogenes SSI-1 21
Streptococcus pyogenes str. Manfredo 23
Streptococcus sanguinis SK36 2
Streptococcus suis 05ZYH33 3
Streptococcus suis 89/1591 2
Streptococcus suis 98HAH33 2
Streptococcus thermophilus CNRZ1066 3
Streptococcus thermophilus LMD-9 3
Streptococcus thermophilus LMG 18311 3
Streptomyces coelicolor A3(2) 64
Streptomyces flavovirens 1
Streptomyces griseus subsp. griseus NBRC 13350 12
Sulfolobus acidocaldarius DSM 639 1
Sulfolobus islandicus 1
Sulfolobus solfataricus P2 9
Sulfolobus tokodaii str. 7 2
Synechococcus elongatus PCC 6301 11
Synechococcus elongatus PCC 7942 11
Synechococcus sp. PCC 7002 1
Synechococcus sp. WH 7803 1
Synechocystis sp. PCC 6803 9
Thermococcus kodakarensis KOD1 2
Thermotoga maritima MSB8 1
Vibrio alginolyticus 12G01 1
Vibrio cholerae 1587 28
Vibrio cholerae 2740-80 32
Vibrio cholerae 623-39 29
Vibrio cholerae B33 32
Vibrio cholerae MAK 757 31
Vibrio cholerae MO10 26
Vibrio cholerae MZO-2 28
Vibrio cholerae MZO-3 26
Vibrio cholerae NCTC 8457 29
Vibrio cholerae O1 biovar El Tor str. N16961 33
Vibrio cholerae O395 35
Vibrio cholerae RC385 18
Vibrio cholerae V51 12
Vibrio cholerae V52 31
Vibrio fischeri ES114 7
Vibrio fischeri MJ11 3
Vibrio harveyi ATCC BAA-1116 5
Vibrio harveyi HY01 4
Vibrio parahaemolyticus AQ3810 5
Vibrio parahaemolyticus RIMD 2210633 6
Vibrio vulnificus CMCP6 16
Vibrio vulnificus YJ016 15
Xanthomonas axonopodis pv. citri str. 306 2
Xanthomonas campestris pv. campestris 8
Xanthomonas campestris pv. campestris str. 8004 7
Xanthomonas campestris pv. campestris str. ATCC 33913 8
Xanthomonas campestris pv. vesicatoria str. 85-10 2
Xanthomonas oryzae pv. oryzae KACC10331 1
Xanthomonas oryzae pv. oryzae MAFF 311018 1
Xanthomonas oryzae pv. oryzae PXO99A 1
Xanthomonas oryzae pv. oryzicola BLS256 1
Xylella fastidiosa 9a5c 1
Xylella fastidiosa Dixon 1
Xylella fastidiosa M12 1
Xylella fastidiosa M23 1
Xylella fastidiosa Temecula1 1
Xylella fastidiosa subsp. sandyi Ann-1 2
Yersinia enterocolitica 8
Yersinia enterocolitica subsp. enterocolitica 8081 8
Yersinia frederiksenii ATCC 33641 1
Yersinia pestis Angola 8
Yersinia pestis Antiqua 8
Yersinia pestis CA88-4125 8
Yersinia pestis CO92 8
Yersinia pestis FV-1 7
Yersinia pestis KIM 10 9
Yersinia pestis Nepal516 5
Yersinia pestis Pestoides F 8
Yersinia pestis biovar Antiqua str. B42003004 8
Yersinia pestis biovar Antiqua str. E1979001 8
Yersinia pestis biovar Antiqua str. UG05-0454 8
Yersinia pestis biovar Mediaevalis str. K1973002 6
Yersinia pestis biovar Microtus str. 91001 8
Yersinia pestis biovar Orientalis str. F1991016 8
Yersinia pestis biovar Orientalis str. IP275 8
Yersinia pestis biovar Orientalis str. MG05-1020 10
Yersinia pseudotuberculosis IP 31758 4
Yersinia pseudotuberculosis IP 32953 6
Yersinia pseudotuberculosis PB1/+ 3
Yersinia pseudotuberculosis YPIII 5
Zymomonas mobilis subsp. mobilis ZM4 2